If you want to choose video, audio or subtitle tracks specifically, you can use stream specifiers
-i "eSourceFile" -y -s 640x360 -b:v 1024k -vcodec libx264 -r 59.94 -movflags faststart -map 0:v:0 -map 0:a:1 -pix_fmt yuv420p "eDestPath\eUUID_1.mp4"
Here, 0:v:0
is the first video stream and 0:a:1
is the second audio stream. So, the output file will be having the video from the track 1 and audio from track 2.